Cotton Assembly and Gene Annotation
August 1, 2023 | Genome
About Adelphocoris suturalis
Assembly
Annotation
Statistics
References
More information
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Adelphocoris suturalis Assembly and Gene Annotation
August 1, 2023 | Genome
About Adelphocoris suturalis
Adelphocoris suturalis (Hemiptera: Miridae) is a notorious agricultural pest, which causes serious economic losses to a diverse range of agricultural crops around the world. The poor understanding of its genomic characteristics has seriously hindered the establishment of sustainable and environment-friendly agricultural pest management through biotechnology and biological insecticides.
Assembly
Here, we report a chromosome-level assembled genome of A. suturalis by integrating Illumina short reads, PacBio, 10x Chromium, and Hi-C mapping technologies. The 1.29 Gb assembly contains twelve chromosomal pseudomolecules with a contig and scaffolds N50 of 2.8 Mb and 120.6 Mb, respectively.
Annotation
A comprehensive gene model prediction integrated with homology-based prediction, RNA-sequencing-assisted prediction and ab initio prediction identified a total of 20,010 protein-coding genes with 86.4% complete BUSCO genes. Of these, more than 94.3% genes are functionally annotated following searches of NR, GO, KEGG, Swiss-Prot and TrEMBL databases.
Statistics
| Statistics | Value |
|---|---|
| Sequencing platform | Illumina+PacBio RS Ⅱ+PacBio Sequel Ⅱ |
| Genome sequencing depth (x) | 260 |
| Genome sequencing depth HiC | 106 |
| Estimated genome size (Gb) | 1.29 |
| Number of scaffolds | 98 |
| Sequenced genome size (Gb) | 1.29 |
| Contig N50 (Mb) | 1.43 |
| Scaffold N50 (Mb) | 120.63 |
| Longest scaffold (Mb) | 188.72 |
| GC content (%) | 38.38 |
| Repetitive sequences (%) | 72.76 |
| Annotated protein-coding genes | 20,010 |
| BUSCO completeness of assembly (%) | 95.3 |
| BUSCO completeness of annotation (%) | 86.4 |
| Statistics | Value |
References
Qin, Y., Sun, M., Li, W., Xu, M., Shao, L., Liu, Y., Zhao, G., Liu, Z., Xu, Z., You, J., Ye, Z., Xu, J., Yang, X., Wang, M., Lindsey, K., Zhang, X. and Tu, L. Single-cell RNA-seq reveals fate determination control of an individual fiber cell initiation in cotton (Gossypium hirsutum). Plant Biotechnol Journal. (2022)
More information
Tools (JBrowse, blast, Gene Search, Gene Expression and Sequence Fetch) used to Interaction with genomic information about this species can be found in InsectDB.
Cotton Single Cell Assembly and Gene Annotation
August 1, 2023 | Genome
About Adelphocoris suturalis
Assembly
Annotation
Statistics
References
More information
Corrupti quos dolores et quas molestias excepturi sint occaecati cupiditate non provident, similique sunt culpa. omnis iste natus error sit voluptatem accusantium doloremque laudantium, totam rem aperiam, eaque ipsa quae.
perspiciatis unde omnis iste natus error sit voluptatem accusantium doloremque laudantium, totam rem aperiam, eaque ipsa quae ab illo inventore veritatis et quasi architecto beatae vitae dicta sunt explicabo ipsam voluptatem quia voluptas sit aspernatur aut odit aut fugit, sed quia consequuntur magni dolores eos qui ratione voluptatem.