CottonHub of
T2T-Jin668 and YZ1
A Comprehensive Database of T2T-Jin668 and YZ1 (two elite genotypes with high regenerative ability) for Functional Genomics Research in Cotton
CRISPR Design and Analysis
Tools used for designing CRISPR sgRNA targets for various systems and editing detection methods for editing materials.
Single Cell Landscape
Gene/Genome Tools
Quick access for the top visited Tools: Gene Search, Gene Accession Conversion, Phylogenetic Tree, Basic Local Alignment Search Tool, Cotton Literature Search Engine and qRT-PCR Analysis.
MutantsDB
MutantsDB: Stable mutants were generated in Jin668 via CRISPR/Cas9-mediated transformation.
- Genotype — genotype information (mutations, alleles, zygosity, sequencing IDs)
- Phenotype — observed phenotypes, penetrance, photos and measurements
- Y2H interactions — yeast two-hybrid interaction results and interaction partners
Gene Landscape
This Gene Landscape visualizes gene expression levels across samples/tissues and supports exploration of expression patterns, clustering, and differential expression.
- Expression matrix — normalized counts (TPM/FPKM/CPM) for genes × samples.
- Heatmap — clustered heatmap of selected genes or top variable genes.
How to cite us
Zhongping Xu#, Guanying Wang#, Xiangqian Zhu, Ruipeng Wang, Longfu Zhu, Lili Tu, Yuling Liu, Renhai Peng, Keith Lindsey, Maojun Wang*, Xianlong Zhang*, Shuangxia Jin*. Genome assembly of two allotetraploid cotton germplasms reveals mechanisms of somatic embryogenesis and enables precise genome editing. Nature Genetics, 2025, https://www.nature.com/articles/s41588-025-02258-3本项目得到了国家自然科学基金杰出青年基金项目（32325039；金双侠）和国家自然科学基金青年基金项目（32201856；许忠平）的资助。